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2008

  1. Williams RS, Moncalian G, Williams JS, Yamada Y, Limbo O, Shin DS, Groocock LM, Cahill D, Hitomi C, Guenther G, Moiani D, Carney JP, Russell P, and Tainer JA. "Mre11 Dimers Coordinate DNA End Bridging and Nuclease Processing in Double-Strand-Break Repair" Cell 2008 Oct 03;135: p 97-109

  2. Duda DM, Borg LA, Scott DC, Hunt HW, Hammel M, Schulman BA. "Structural insights into NEDD8 activation of cullin-RING ligases: conformational control of conjugation." Cell 2008 Sep 19;134(6):995-1006

  3. Iyer RR, Pohlhaus TJ, Chen S, Hura GL, Dzantiev L, Beese LS, Modrich P. "The MutSα-proliferating cell nuclear antigen interaction in human DNA mismatch repair." J Biol Chem (2008) vol. 283 (19) pp. 13310-9

  4. Borovinskaya MA, Shoji S, Fredrick K, Cate JH. "Structural basis for hygromycin B inhibition of protein biosynthesis." RNA. 2008 Aug;14(8):1590-9

  5. Chrencik JE, Brooun A, Zhang H, Mathews II, Hura GL, Foster SA, Perry JJ, Streiff M, Ramage P, Widmer H, Bokoch GM, Tainer JA, Weckbecker G, Kuhn P. "Structural basis of guanine nucleotide exchange mediated by the T-cell essential Vav1." J Mol Biol. 2008 Jul 25;380(5):828-43.

  6. Lee JE, Fusco ML, Hessell AJ, Oswald WB, Burton DR, Saphire EO. "Structure of the Ebola virus glycoprotein bound to an antibody from a human survivor." Nature. 2008 Jul 10;454(7201):177-82.

  7. Cunningham CN, Krukenberg KA, Agard DA. "Intra- and intermonomer interactions are required to synergistically facilitate ATP hydrolysis in Hsp90." J Biol Chem. 2008 Jul 25;283(30):21170-8.

  8. Laurberg M, Asahara H, Korostelev A, Zhu J, Trakhanov S, Noller HF. "Structural basis for translation termination on the 70S ribosome." Nature. 2008 Aug 14;454(7206):852-7.

  9. Krukenberg KA, Förster F, Rice LM, Sali A, Agard DA. "Multiple conformations of E. coli Hsp90 in solution: insights into the conformational dynamics of Hsp90." Structure. 2008 May;16(5):755-65.

  10. Rice LM, Montabana EA, Agard DA. "The lattice as allosteric effector: structural studies of alphabeta- and gamma-tubulin clarify the role of GTP in microtubule assembly." Proc Natl Acad Sci U S A. 2008 Apr 8;105(14):5378-83.

  11. Pai RD, Zhang W, Schuwirth BS, Hirokawa G, Kaji H, Kaji A, Cate JH. "Structural Insights into ribosome recycling factor interactions with the 70S ribosome." J Mol Biol. 2008 Mar 7;376(5):1334-47.

  12. Li Fan, Jill O Fuss, Quen J Cheng, Andrew S Arvai, Michal Hammel, Victoria A Roberts, Priscilla K Cooper, John A Tainer. "XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutations." Cell (2008) vol. 133 (5) pp. 789-800

  13. Fan L, Williams RS, Shin DS, Chapados B, and Tainer JA (2008) in Thermophiles: Biology and Technology at High Temperatures (F. Robb, G. Antranikian, D. Grogan, , A. Driessen editors), Chapter 15: Master keys to DNA Replication, Repair, and Recombination from the Structural Biology of Enzymes from Thermophiles pp. 239- 264.

2007

  1. Putnam CD, Hammel M, Hura GL, Tainer JA "Solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution"
    Q Rev Biophys. 2007 Aug;40(3):191-285.

  2. Zhang X, Pickin KA, Bose R, Jura N, Cole PA, Kuriyan J. "Inhibition of the EGF receptor by binding of MIG6 to an activating kinase domain interface."
    Nature. 450(7170):741-4 November 29, 2007

  3. Korostelev A, Trakhanov S, Asahara H, Laurberg M, Lancaster L, Noller HF. "Interactions and dynamics of the Shine Dalgarno helix in the 70S ribosome."
    Proc Natl Acad Sci U S A. 2007 Oct 23;104(43):16840-3.

  4. Korostelev A, Trakhanov S, Laurberg M, Noller HF. "Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements."
    Cell. 2006 Sep 22;126(6):1065-77.

  5. Williams RS, Williams JS, Tainer JA. "Mre11-Rad50-Nbs1 is a keystone complex connecting DNA repair machinery, double-strand break signaling, and the chromatin template."
    Biochem Cell Biol. 2007 Aug;85(4):509-20

  6. Borovinskaya MA, Shoji S, Holton JM, Fredrick K, Cate JH. "A steric block in translation caused by the antibiotic spectinomycin."
    ACS Chem Biol. 2007 Aug 17;2(8):545-52.

  7. Borovinskaya MA, Pai RD, Zhang W, Schuwirth BS, Holton JM, Hirokawa G, Kaji H, Kaji A, Cate JH. "Structural basis for aminoglycoside inhibition of bacterial ribosome recycling."
    Nat Struct Mol Biol. 2007 Aug;14(8):727-32.

  8. Corbett KD, Benedetti P, Berger JM. "Holoenzyme assembly and ATP-mediated conformational dynamics of topoisomerase VI."
    Nat Struct Mol Biol. 2007 Jul;14(7):611-9.

  9. Mendillo ML, Putnam CD, Kolodner RD. "Escherichia coli MutS tetramerization domain structure reveals that stable dimers but not tetramers are essential for DNA mismatch repair in vivo."
    J Biol Chem. 2007 Jun 1;282(22):16345-54.

  10. Berk V, Cate JH. "Insights into protein biosynthesis from structures of bacterial ribosomes."
    Curr Opin Struct Biol. 2007 Jun;17(3):302-9.

  11. Aleshin AE, Shiryaev SA, Strongin AY, Liddington RC. "Structural evidence for regulation and specificity of flaviviral proteases and evolution of the Flaviviridae fold."
    Protein Sci. 2007 May;16(5):795-806.

  12. Peters-Libeu CA, Newhouse Y, Hall SC, Witkowska HE, Weisgraber KH. "Apolipoprotein E*dipalmitoylphosphatidylcholine particles are ellipsoidal in solution."
    J Lipid Res. 2007 May;48(5):1035-44.

  13. Shell SS, Putnam CD, Kolodner RD. "The N terminus of Saccharomyces cerevisiae Msh6 is an unstructured tether to PCNA."
    Molecular Cell. 2007 May 25;26(4):565-78.

  14. Tsutakawa SE, Hura GL, Frankel KA, Cooper PK, Tainer JA. "Structural analysis of flexible proteins in solution by small angle X-ray scattering combined with crystallography."
    J Struct Biol. 2007 May;158(2):214-23.

  15. Moncoq K, Trieber CA, Young HS. "The molecular basis for cyclopiazonic acid inhibition of the sarcoplasmic reticulum calcium pump."
    J Biol Chem. 2007 Mar 30;282(13):9748-57.

  16. Yamagata A, Tainer JA. "Hexameric structures of the archaeal secretion ATPase GspE and implications for a universal secretion mechanism."
    EMBO J. 2007 Feb 7;26(3):878-90.

  17. Aoyagi M, Zhai D, Jin C, Aleshin AE, Stec B, Reed JC, Liddington RC. "Vaccinia virus N1L protein resembles a B cell lymphoma-2 (Bcl-2) family protein."
    Protein Sci. 2007 Jan;16(1):118-24.

  18. Holton JM "XANES measurements of the rate of radiation damage to selenomethionine side chains"
    J. Synchrotron Rad. 14, 51-72 January 2007

2006

  1. Buczek P and Horvath MP, "Structural Reorganization and the Cooperative Binding of Single-stranded Telomere DNA in Sterkiella nova"
    J. Biol. Chem., Vol. 281, Issue 52, 40124-40134, December 29, 2006

  2. Berk V, Zhang W, Pai RD, Cate JH. "Structural basis for mRNA and tRNA positioning on the ribosome."
    Proc Natl Acad Sci U S A. 2006 Oct 24;103(43):15830-4.

  3. Pioletti M, Findeisen F, Hura GL, Minor DL, Jr. "Three-dimensional structure of the KChIP1/Kv4.3 T1 complex reveals across-shaped octamer."
    Nat Struct Mol Biol. EPUB October 22.

  4. Pascal JM, Tsodikov OV, Hura GL, Song W, Cotner EA, Classen S, Tomkinson AE, Tainer JA and Ellenberger T, "A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA"
    Molecular Cell, Volume 24, Issue 2, , 20 October 2006, Pages 279-291.

  5. Schuwirth BS, Day JM, Hau CW, Janssen GR, Dahlberg AE, Cate JH, Vila-Sanjurjo A. "Structural analysis of kasugamycin inhibition of translation."
    Nat Struct Mol Biol. 2006 Oct;13(10):879-86.

  6. Korostelev A, Trakhanov S, Laurberg M, and Noller HF, "Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements."
    Cell 126, 1–13, September 22, 2006.

  7. Lamers MH, Georgescu RE Sang-Gyu Lee, O'Donnell M, and Kuriyan J, "Crystal Structure of the Catalytic α Subunit of E. coli Replicative DNA Polymerase III."
    Cell 126, 881–892, September 8, 2006.

  8. Kozlov G, Maattanen P, Schrag JD, Pollock S, Cygler M, Nagar B, Thomas DY, Gehring K, "Crystal Structure of the bb' Domains of the Protein Disulfide Isomerase ERp57"
    Structure, Volume 14, Issue 8, , August 2006, Pages 1331-1339.

  9. Hansen CL, Classen S, Berger JM, Quake SR, "A microfluidic device for kinetic optimization of protein crystallization and in situ structure determination."
    J Am Chem Soc. 128(10):3142-3, March 15, 2006.

  10. Sundheim O, Vagbo CB, Bjoras M, Sousa MM, Talstad V, Aas PA, Drablos F, Krokan HE, Tainer JA, Slupphaug G, " Human ABH3 structure and key residues for oxidative demethylation to reverse DNA/RNA damage."
    EMBO J. 25:3389-97, 2006.

  11. Fan L, Arvai AS, Cooper PK, Iwai S, Hanaoka F, Tainer JA, "Conserved XPB Core Structure and Motifs for DNA Unwinding: Implications for Pathway Selection of Transcription or Excision Repair."
    Molecular Cell v22 pp.27-37, 2006.

  12. Fan L, Kim S, Farr CL, Schaefer KT, Randolph KM, Tainer JA, Kaguni LS, "A Novel Processive Mechanism for DNA Synthesis Revealed by Structure, Modeling and Mutagenesis of the Accessory Subunit of Human Mitochondrial DNA Polymerase"
    J Mol Biol. v358 pp.1229-1243, 2006.

  13. Nagar B, Hantschel O, Seeliger M, Davies JM, Weis WI, Superti-Furga G, Kuriyan J, "Organization of the SH3-SH2 unit in active and inactive forms of the c-Abl tyrosine kinase."
    Molecular Cell 21(6):787-98, 2006.

  14. Levinson NM, Kuchment O, Shen K, Young MA, Koldobskiy M, Karplus M, Cole PA, Kuriyan J, "A SRC-like inactive conformation in the abl tyrosine kinase domain."
    PloS Biology v4 pp.753-767, 2006.

2005

  1. Khayat R, Tang L, Young M, Johnson JE, "Structure of an archaeal virus capsid protein reveals an evolutionary relationship to eucaryotic and bacterial viruses."
    Proc Natl Acad Sci USA. 102(52): 18944–18949, December 27, 2005.

  2. Rosenberg OS, Deindl S, Sung RJ, Nairn AC, Kuriyan J, "Structure of the autoinhibited kinase domain of CaMKII and SAXS analysis of the holoenzyme."
    Cell 123(5):849-60 December 2, 2005.

  3. Schuwirth BS, Borovinskaya MA, Hau CW, Zhang W, Vila-Sanjurjo A, Holton JM, Cate JH, "Structures of the bacterial ribosome at 3.5 A resolution."
    Science 310(5749):827-34 Novembr 4, 2005.

  4. Corn JE, Pease PJ, Hura GL, Berger JM, "Crosstalk between primase subunits can act to regulate primer synthesis in trans."
    Molecular Cell 20(3):391-401, November 11, 2005.

  5. Chao JA, Lee JH, Chapados BR, Debler EW, Schneemann A, Williamson JR, "Dual modes of RNA-silencing suppression by Flock House virus protein B2. "
    Nat Struct Mol Biol. 12(11):952-7, November 2005.

  6. Olson R, Huey-Tubman KE, Dulac C, Bjorkman PJ, "Structure of a pheromone receptor-associated MHC molecule with an open and empty groove. "
    PLoS Biology 3(8):e257 August 2005.

2004

  1. Pascal JM, O'Brien PJ, Tomkinson AE, Ellenberger T, "Human DNA ligase I completely encircles and partially unwinds nicked DNA."
    Nature 432(7016):473-8, November 25, 2004.

  2. Barondeau DP, Kassmann CJ, Bruns CK, Tainer JA, Getzoff ED, "Nickel superoxide dismutase structure and mechanism."
    Biochemistry 43(25):8038-47, June 29, 2004.

  3. MacDowell AA, Celestre RS, Howells M, McKinney W, Krupnick J, Cambie D, Domning EE, Duarte RM, Kelez N, Plate DW, Cork CW, Earnest TN, Dickert J, Meigs G, Ralston C, Holton JM, Alber T, Berger JM, Agard DA, Padmore HA. "Suite of three protein crystallography beamlines with single superconducting bend magnet as the source."
    J Synchrotron Radiat. 11:447-55, November 2004.